For colonies of the first 31 sites (SoMu01-SoBp31), I have only posted a single image for each colony (PaPd01-65) upon which I am overlaying the respective data file(s). I sampled approximately 200 Seriatopora spp. and so will eventually post those images and data, as well. Colonies were not found to be demonstrating aberrant cellular behavior unless specifically noted (e.g., SoPd04).

MUNDA (“Mu;” 2015-10-29) For high-resolution habitat maps, see https://maps.lof.org/lof.

SoMu01-03: sampled two P. acuta colonies (SoPd01-02) only; Seriatopora spp. not present.

SoMu02: neither P. damicornis nor P. acuta present; instead sampled Seriatopora spp. (SoSe01-03).

SoMu03: sampled Pocillopora spp. (SoPd03-05) and Seriatopora spp. (SoSe04-06).

SoPd01

This P. acuta colony was both genotyped and analyzed in full for a number of molecular-scale response variables:

JMP

Excel

supplemental data-JMP

supplemental data-Excel

SoPd02

This P. acuta was genotyped and analyzed in full: JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd03

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd04

This P. acuta sample was deemed an outlier by virtue of its over-expression of the Symbiodinium rbcL (RuBisCO) gene mRNA:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd05

This P. acuta colony was genotyped though not analyzed in full; Symbiodinium ubiquitin ligase mRNA expression was not quantified. All other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

GIZO (“Gz;” 2015-10-30 & 10-31) For high-resolution habitat maps, see https://maps.lof.org/lof.

Gizo day 1 (2015-10-30)

SoGz04: neither P. damicornis, P. acuta, nor Seriatopora spp. present.

SoGz05: sampled seven Pocillopora spp. (SoPd06-12) and one Seriatopora spp. (SoSe07) colonies.

SoGz06: sampled one Pocillopora sp. (SoPd13) and 10 Seriatopora spp. (SoSe08-17).

SoPd06

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd07

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd08

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd09

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd10

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd11

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd12

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd13

This P. damicornis colony was genotyped though not analyzed in full; here are the supplemental data:

supplemental data (JMP)

supplemental data (Excel)

Gizo day 2 (2015-10-31)

SoGz07: Sampled three P. acuta (SoPd14-16) and three Seriatopora spp. (SoSe18-20) colonies.

SoGz08: Sampled three Pocillopora spp. (SoPd17-19) and one Seriatopora sp. (SoSe21) colony. Sample SoPd17 was genotyped as P. brevicornis, while all others from Gizo were P. acuta.

SoGz09: P. acuta was present but not sampled. Instead focused on Seriatopora spp. (SoSe22-28).

SoPd14

This P. acuta colony was genotyped but not analyzed in full (Symbiodinium ubiq-lig mRNA expression was not assessed.). The bleached portion of the colony was sampled:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd15

This P. acuta colony was both genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd16

This P. acuta colony was genotyped though not analyzed in full (Symbiodinium ubiq-lig mRNA expression was not assessed.):

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPb17

This P. brevicornis colony was genotyped but not analyzed for gene expression given that it was not a target species. Other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

SoPd18

This sample was neither genotyped nor analyzed in full due to having used Direct-zol columns, which resulted in failed RNA and DNA extractions. Other data can be found here:

supplemental data

SoPd19

This P. acuta colony was genotyped but not analyzed for gene expression. Other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

KEREHIKAPA (“Kp;” 2015-11-01) For high-resolution habitat maps, see https://maps.lof.org/lof.

SoKp10: sampled both Pocillopora sp. (SoPd21) and Seriatopora spp. (SoSe29-35) colonies. Please note that SoPd20 was an inadvertently sampled Seriatopora spp. colony.

SoKp11: 1st night dive site of trip: sampled tagged P. acuta colonies (SoPd22-26) in both the day and night. Also sampled two Seriatopora spp. colonies at this site (SoSe36-37).

SoKp12: did not dive on account of setting up for night dive.

SoPd21

Nucleic acids were not extracted from this presumed P. acuta colony. Other data can be found here.

SoPd22

This P. acuta colony was genotyped, sampled during the day, and then again at night. Both light and dark data can be found in these files:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd23

It is worth noting that this P. acuta colony underwent a shift in Symbiodinium assemblage, either as a result of sampling different parts of the colony between day and night, or as a result of the time change (likely the former):

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd24

This P. acuta colony was genotyped and sampled in both day and night. However, gene expression was only assessed in the night biopsy (unsure why):

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd25

This P. acuta colony was genotyped, sampled in both day and night, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd26

This P. acuta colony was genotyped, sampled in both day and night, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SIKOPO (“Si;” 2015-11-02)-see Kerehikapa map above. For high-resolution habitat maps, see https://maps.lof.org/lof.

SoSi13: sampled three P. acuta (SoPd27-29) and four Seriatopora spp. (SoSe38-41) colonies.

SoSi14: P. damicornis and P. acuta likely present but did not sample; instead focused on Seriatopora spp. (SoSe42-46).

SoSi15: P. damicornis and P. acuta likely present but did not sample; instead focused on Seriatopora spp. (SoSe47-49).

SoPd27

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd28

Sampled a bleached portion of this P. acuta colony, which was genotyped and analyzed in full:

JMP

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supplemental data (JMP)

supplemental data (Excel)

SoPd29

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

MALAKOBI (“ML;” 2015-11-03 and 11-04) For high-resolution habitat maps, see https://maps.lof.org/lof.

Malakobi day 1 (2015-11-03)

SoMl16: Seriatopora spp. were not present at this site; sampled Pocillopora spp. only (SoPd30-32).

SoMl17: second night dive site. Sampled both Pocillopora spp. (SoPd33-38, with all but the final [P. brevicornis] being P. acuta) and Seriatopora spp. (SoSe50-54) in day and night (albeit either day OR night for the latter genus [not both times]).

SoMl18: did not dive on account for setting up for night dive

SoPd30

This presumed P. acuta colony was neither genotyped nor analyzed for molecular response variables on account of both RNA and DNA extractions having failed (due to using Direct-zol columns). Supplemental data can be found here.

SoPd31-outlier

This P. acuta colony was both genotyped and found to be an outlier, namely due to extremely high expression levels of the host coral GFP-like chromoprotein gene:

JMP

Excel

supplemental data (JMP)
supplemental data (Excel)

SoPd32

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd33 light-dark

This P. acuta colony was genotyped, sampled in both day and night, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd34 light-dark

This P. acuta colony, which was genotyped, was sampled in both day and night. However, it was not analyzed for all molecular response variables on account of having extracted low quality RNA and DNA. Other data can be found here:

JMP

Excel

SoPd35

This P. acuta colony was tagged, sampled in both day and night, genotyped, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

Interesting, this colony displayed an aberrantly high Symbiodinium GCP (molecular proxy for density) in the daytime, but not at night; only the former sample was considered an outlier.

SoPd36

This P. acuta colony was sampled in both day and night, genotyped, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd37

This P. acuta colony was genotyped, sampled in both day and night, and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPb38

This P. brevicornis colony was genotyped, sampled in both day and night, and analyzed in full. However, it was not tested for aberrant behavior given the small number of P. brevicornis colonies sampled in the country (n=8, of which only):

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

Malakobi day 2 (2015-11-04)

SoMl19: sampled three Pocillopora spp. (SoPd39-41, with all but the final [P. damicornis] being P. acuta) and five Seriatopora spp. (SoSe55-59) colonies.

SoMl20: sampled two P. acuta (SoPd42-43) and four Seriatopora spp. (SoSe60-63) colonies.

SoMl21: did not dive (sick)

SoPd39

This P. acuta colony was genotyped though not analyzed for gene expression:

supplemental data (JMP)

supplemental data (Excel)

SoPd40

This P. acuta colony was genotyped though not analyzed in full; other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

SoPd41

This P. damicornis colony was genotyped though not analyzed for other molecular response variables; other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

SoPd42

This P. acuta colony was genotyped though not analyzed for other molecular response variables; other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

SoPd43

This P. acuta colony was genotyped though not analyzed in full; other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

NONO (“Nn;” 2015-11-05 & 11-06) For high-resolution habitat maps, see https://maps.lof.org/lof.

Nono day 1 (2015-11-05)

SoNn22: sampled one P. brevicornis (SoPd44) and three Seriatopora spp. (SoSe64-66) colonies.

SoNn23: sampled one P. acuta (SoPd45) and two Seriatopora spp. (SoSe67-68) colonies.

SoNn24: sampled three Pocillopora spp. (SoPd46 [P. acuta], SoPd47 [P. brevicornis], and SoPd49 [P. damicornis]) and three Seriatopora spp. (SoSe69-71) colonies.

SoPd44

This P. brevicornis colony was genotyped and analyzed in full (though not assessed for aberrant behavior since it was not the target genotype):

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd45

This P. acuta colony was genotyped and analyzed for all response variables except for Symbiodinium ubiq-lig mRNA expression:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd46

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd47

This P. brevicornis colony was genotyped and analyzed in full. However, it was not considered in the statistical analysis given the small number of P. brevicornis colonies sampled.

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd48

This P. damicornis colony was genotyped and analyzed in full. However, it was excluded from statistical analyses given the small number of P. damicornis colonies sampled.

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

Nono day 2 (2015-11-06)

SoNn25: sampled one P. acuta (SoPd49) colony. Seriatopora spp. were not observed at this site.

SoNn26: sampled three P. acuta (SoPd50-52) and eight Seriatopora spp. (SoSe72-79) colonies.

SoNn27: sampled one P. acuta (SoPd53) and four Seriatopora spp. colonies (SoSe80-83).

SoPd49

This P. acuta colony was genotyped but not analyzed in full; dinoflagellate ubig-lig mRNA expression was not assessed (ran out of RNA). Other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd50

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd51

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd52

This P. acuta colony was genotyped though not analyzed in full; dinoflagellate ubiq-lig mRNA expression was not assessed (possibly due to having un out of RNA). Other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd53

This P. acuta colony was genotyped though not analyzed in full (insufficient RNA to assess dinoflagellate ubig-lig mRNA expression). Other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

MAROVO (“Mo;” 2015-11-07) For high-resolution habitat maps, see https://maps.lof.org/lof.

SoMo28: sampled four P. acuta (SoPd54-57) and five Seriatopora spp. (SoSe84-88) colonies.

SoMo29: sampled four P. acuta (SoPd58-61) and two Seriatopora spp. (SoSe89-90) colonies.

SoMo30: sampled three P. acuta (SoPd62-64) and one Seriatopora sp. (SoSe91) colonies.

SoPd54

This P. acuta colony was genotyped though not analyzed for gene expression. Other data can be found here:

supplemental data (JMP)

supplemental data (Excel)

SoPd55

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd56

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd57

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd58

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd59

This P. acuta colony was genotyped though not analyzed in full; dinoflagellate ubiq-lig mRNA expression was not documented (possibly due to having run out of RNA). Other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd60

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd61

This P. acuta colony was genotyped, analyzed in full, and found to be an outlier. This was mainly driven by an aberrantly high level of dinoflagellate zifl1-like mRNA expression:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd62

This P. acuta colony was genotyped though not analyzed in full; dinoflagellate ubiq-lig mRNA expression was not assessed (presumably due to having run out of RNA). Other data can be found here:

JMP

Excel

supplemental data (JMP)
supplemental data (Excel)

SoPd63

This P. acuta colony was genotyped and analyzed in full:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

SoPd64

This P. acuta colony was genotyped, though, since dinoflagellate ubiq-lig mRNA expression was not measured, it was excluded from the outlier analysis. Other data can be found here:

JMP

Excel

supplemental data (JMP)

supplemental data (Excel)

BULLY POINT (“Bp";” 2015-11-9) For high-resolution habitat maps, please see https://maps.lof.org/lof.

One dive (SoBp31) was done off Lata Island (which looks like a rabbit to me) en route to the eastern half of the country. One P. acuta colony (SoPd65) and seven Seriatopora spp. (SoSe92-98) colonies were sampled.

SoPd65

This P. acuta colony was genotyped but not assessed for other molecular response variables given that it was the only colony seen at the dive site. Other data can be found here:

supplemental data (JMP)

supplemental data (Excel)